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Interspecific and intraspecific variation in gastrointestinal microbiota composition of parrots and its association with incidence of selected disorders
Černá, Kateřina ; Vinkler, Michal (advisor) ; Rychlík, Ivan (referee)
Captive parrots are susceptible to various digestive, metabolic, and behavioural disorders. Recent research in other vertebrates has suggested that these disorders can be linked to the gut microbiota, directly or through the microbiota-gut-brain axis. Although many commercial probiotic products intended for the use in parrots advertise beneficial effects on digestion and mental well- being, these statements are not sufficiently supported with publicly available scientific evidence, but probably rather based on the extrapolation of the knowledge of microbiota-gut-brain interactions in poultry, mice, and humans. However, there are substantial differences in the gastrointestinal tract morphology and gut microbiota composition between parrots and these model vertebrates. This thesis aimed to describe the interspecific and intraspecific variation in the gut microbiota composition of parrots and to link the variation in microbial communities to the incidence of eight selected behavioural and physiological disorders. The gut microbiota composition of 491 individuals from 85 parrot species was analysed using 16S rRNA metabarcoding. The host species, type of feed, and housing environment were identified as the main factors influencing the diversity and composition of the gut microbiota of parrots. A...
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Probiotics, prebiotics, synbiotics and postbiotics in breast milk and formulas.
ŠEBÍKOVÁ, Lucie
Intestinal microbiotics make up about 80 % of our immunity. The biggest colonization by these microorganisms happens in the first 1000 days in the life of a child, which is why it is important to maintain a balanced diet, to properly support growth and diversity of an intestinal flora. In the theoretic part of my thesis I will look closely on composition of breast milk and on other kinds of substitution of dairy nutrition. You will learn that many factors affect the composition of intestinal microbiotics. For if it comes to dysmicrobia, for example as a result of long-term use of antibiotics, it could lead to development of metabolic, immunologic and psychic issues. The goal of my bachelor thesis was to learn the contents of probiotics, prebiotics, postbiotics and synbiotics in breast milk, and in the formulas in the 1st, 6th, 12th and 18th month. My sources were professional literature and the websites of chosen dairy nutrition. For learning the exact intake of the observed substances I evaluated menus from 10 respondents. Breast milk is the most natural form of nutrition, which is why it is used as a template for making the substitution of dairy nutrition. The closest to breast milk in contents of synbiotics are brands Hipp BIO combiotik and BEBA COMFORT HM-O. Nutrilon advance has the most similar count of prebiotics, which was confirmed by observing the specific intake from menus. Nutrilon and Hami are only brands containing postbiotics thanks to the process of directed fermentation Lactofidus. This data should help in deciding what substitution of dairy nutrition to choose, if a child cannot be breastfed. But since this thesis does not evaluate the complete contents of the formulas, but rather the contains of the observed substances, we cannot presume the brands with the best results are the best option of nutrition. The choice of nutrition should be discussed with a pediatrician or a nutritionist.
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Induction of immune responses by intestinal segmented filamentous bacteria
Pacáková, Iva ; Dobeš, Jan (advisor) ; Schwarzer, Martin (referee)
The intestine is constantly exposed to a variety of pathogens, and therefore a proper function of the intestinal barrier is essential for the overall health of the body. Segmented filamentous bacteria are members of the gut microbiota residing in the terminal ileum of the small intestine, where they penetrate through the mucus layer and tightly associate with intestinal epithelial cells. This SFB association with the epithelium is accompanied by the formation of endocytic vesicles filled with an antigen that triggers the IgA production in the intestine and the Th17 cell dependent immune response. There are two steps for the induction of Th17 cells. First, SFB-dependent induction of Th17 cells requires antigen presentation by MHC class II molecules. Therefore, antigen-presenting cells migrate to the site of induction in mesenteric lymph nodes and prime antigen-specific naive T cells to become RORγt+ pre-Th17 T cells. Secondly, activated T cells migrate back to the lamina propria, where they undergo functional maturation by triggering cytokine production. As a result, Th17 cells accumulate in lamina propria, where they produce their effector cytokines IL-17 and IL-22, further affecting the gut's overall balance. However, the extensive Th17 polarization induced by SFB may subsequently contribute to...
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Ecological aspects affecting microbiota in the digestive tracts of birds
Schmiedová, Lucie ; Kreisinger, Jakub (advisor) ; Mrázek, Jakub (referee) ; Gvoždíková Javůrková, Veronika (referee)
The results indicate that songbird GM is dominated by the bacterial phyla Proteobacteria, Firmicutes, Actinobacteria, Tenericutes, Bacteroidetes and Chlamydia, a community that differs from that of mammals. A t the interspecies l evel, GM composition is mainly influenced by phylogeny and less so by sampling site. While ecological factors , and especially diet , are important GM predictors in mammals, the effect of ecological factors , including diet , have a much smaller effect on inte r - and intraspecific variability in songbird GM composition . Our data from barn swallows ( Hirundo rustica ) suggest an effect of social GM transmission among adults forming social pair s, as well as trans - generational transmission from a social mother to her own nestlings. At the same time, we observed differ ing GM in adults and nestlings, with no dramatic change in GM with nestling age, a process previously recognised in mammals. Part of the GM detected appears to remain stable over time , and is therefore su itable for further detailed study. To conclude, our studies demonstrate that s ongbird GM differs from that of mammals and that the factors influencing GM composition appear to differ from those in mammals , thereby highlighting the importance of study ing mu ltiple vertebrate groups (not just mammals ) when...
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The role of nutrition in the prevention of osteoporosis: calcium, proteins and gut microbiota
Holánová, Karolína ; Zikán, Vít (advisor) ; Vágnerová, Tereza (referee)
Introduction: Osteoporosis is defined as a systemic metabolic disease of skeleton. It is characterized by reduced amounts of bone mass and degradation of bone tissue microarchitecture with increased chances of fractures occurring. Women after menopause are affected by lack of estrogen and therefore have increased risk of osteoporosis. Goal: The goal of the diploma thesis is to evaluate the nutritional state of women after menopause with osteoporosis (With OP) and without osteoporosis (Without OP) focusing on calcium, proteins and nutrients which are affecting gut microbiota (prebiotics and probiotics). Methods: Nutritional state was evaluated based on three-day diet analysis and questionnaire about dietary preferences. Amounts of particular nutrients in respondents diets were obtained by using web page www.kaloricketabulky.cz. Bone material densities were measured by dual energy X-ray absorptiometry (DXA). Results: Nutritional breakdown of diets did not show any statistically significant differences in most of the cases. The only exception was protein and fiber intake, where the group without OP reported higher intake. Both sets of respondents reported higher intake of calories, fats and proteins then recommended. On the other hand, low intake of carbs, fiber, calcium and probiotics was discovered...
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Microbiota as a modulator of carcinogenesis
Benešová, Iva ; Kverka, Miloslav (advisor) ; Krulová, Magdaléna (referee)
Many studies show the ability of gut microbes to modulate the anti-tumour immune response by direct triggering the immune cells or by bacterial metabolites. Interestingly bacteria may even migrate to the tumour tissue and orchestrate the immune response on site. These anti-tumour effects can be improved by the administration of immune checkpoint inhibitors (ICI). Notably, some microbial effects occur only in the presence of ICI. On the contrary, microbiota may also promote tumour growth and negatively impact the effects of ICI therapy. We have disrupted the gut microbiota homeostasis by antibiotics (ATB) to study the effects of gut microbiota on the ICI. This disturbance led surprisingly to reduced tumour growth and enhanced pro-inflammatory immune response not only in the gut but also within the tumour tissue, where especially IFN-γ orchestrated the anti-tumour immune response. Importantly the anti-tumour immune response could be transferred through colonisation of germ-free mice by ATB-changed gut microbiota if concomitantly anti- programmed cell death protein 1 (αPD-1) monoclonal antibody was administrated. These mice had elevated levels of segmented filamentous bacteria (SFB), which induced systemic immune response with increased expression of IL-17 and elevated amounts of Th 17 cells,...
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Sexual dimorphism of rat gut microbiota composition and intestinal immunity
Kalousová, Pavla ; Kovařík, Miroslav (advisor) ; Jílek, Petr (referee)
Charles University Faculty of Pharmacy in Hradec Králové Department of Biological and Medical Sciences Candidate: Pavla Kalousová Supervisor: PharmDr. Miroslav Kovařík, Ph.D. Title: Sexual dimorphism of rat gut microbiota composition and intestinal immunity Background and Aim: Many factors can influence the composition of gut microbiota and the immune system. It is well-known that one of those factors is sex. This sexual dimorphism can lead to a specifically adjusted treatment of diseases for different gender and nutritional interventions. This study focuses on analysing sexual differences in gut microbiota and intestinal immunity in adult rats. Methods: Caecal content from 12-week-old female and male Wistar rats were collected and analysed by DNA-sequencing technique to characterize microbiota composition. ELISA test was performed to quantify the concentration of IgA in faeces and gut wash. Flow cytometry determined the concentration of IgA-coating bacteria in faecal samples. Results: Metagenomic analysis revealed that female gender presents 1 phylum, 4 families, 13 genera, and 13 species which are not present in male rats. Only one male-specific colonization was observed at the species level. Quantitative analysis showed a higher proportion of Firmicutes phylum in males which was associated with...
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Changes in microbial colonization of gastrointestinal tract in patients after allogeneic hematopoietic stem cell transplantation
Michková, Petra ; Mrázek, Jakub (advisor) ; Kodešová, Tereza (referee)
Introduction: Physiological microflora is characterised by wide diversity. The microbial community is mostly composed of bacteria, but also includes fungi, archaea and viruses. Anaerobic commensal bacteria (Firmicutes and Bacteroidetes) dominate 90% of the colon. The composition and products of the gut microbiota have a significant effect on an individual's immune system, and their interactions may ultimately promote immune tolerance or inflammatory immune response. Blood cell transplantation (HSCT) and its associated standard procedures of conditioning, antibiotic exposure and dietary prophylaxis represent modification and disruption of the gut microbiota leading to the development of some serious post-transplant complications affecting the OS (overall survival) and TRM (treatment related mortality) of patients. Objectives: The aim of this work was to investigate the representation of individual bacterial strains in patients undergoing allogeneic HSCT, as well as the effect of transplantation on the composition and diversity of their gut microbiota. Methods: Stool samples were obtained from 52 patients who underwent an allogeneic hematopoietic cell transplant at the Institute of Hematology and Blood Transfusion in Prague. A cut-off date for the first sample was set for the start of...
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Zdravotní aspekty a využití probiotických mikroorganismů
Ishaková, Žaneta
The bachelor thesis deals with the health aspects and the use of probiotic microorganism in food and pharmaceutical industry. There are characterized some genera of probiotic and their microbiological and technological requirements in the work. Subsequently are described the effects of probiotic on diseases related to the immune and gastrointestinal system. Further work is focused on the probiotic products such as dietary supplements containing probiotics and fermented dairy products. The last part is devoted to the legislative demands on probiotics.
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